Keep in mind that he's asking specifically about the D-Jet injection which is very different from Motronic. My experience with the D-Jet has been mixed. D-Jet is an analog system, so much of it runs on various resistance sensors which get old and start acting erratically (think about the symptoms when you have a bad fuel level sender -- sometimes it works and sometimes it doesn't. It operates on the same principal as the D-Jet throttle position sensor). When the D-Jet works, it works well on a stock motor. The problem is, even the newest original components are now at least 32 years old. Most of the stuff is still available new, but it can be hard to find and really expensive -- for instance, a new manifold pressure sensor runs about $700 -- and the car won't run without it. The distributor is also a one-off which is impossible to find. Don't think you can just swap in one from an L-Jet car.
That said, a well-sorted CSi is a bit smoother, faster and has more torque compared to a carbed 3.0. The CSi came with higher-compression pistons and the 3.25 diff makes for a nice highway cruiser. Other than that, they are pretty much the same with the exception of the fuel delivery system. If you want a stock example and intend to keep it that way, I would not hesitate to get a CSi. If you are a tinkerer and you think you'll be adding a cam, headers, 3.5L motor, etc., then I'd opt for a carb'ed version since the D-Jet isn't really able to compensate for any modifications to the flow of air into or out of the motor. Unless you really understand injection systems, you'll be asking for trouble if you try to run the D-Jet on a non-stock motor.
When I did my 3.5, I removed all of the D-Jet parts and carefully packed them away for a rainy day. I converted the whole system over to a GM-based ECU and sensors with fully programmable fuel and ignition control. It can compensate for the internal engine changes, looks nearly stock and actually works very well. Of course, I have about 200 hours of R&D and tuning wrapped up in a custom, one-off system, but it works for me.