Rear windows with the original motors can be tough to keep working. Basically, the motors lose torque, the grease on the window tracks hardens, and if the regulators aren't perfectly aligned, the motors just don't have enough oomph to raise the windows. Lots has been written on e9coupe.com about e9 power windows if you'd like more detail. Most likely this is your issue (though sure, the restoration shop may have simply not connected the wiring properly).
TomHom's questions are good. He mentions removing the circular plug over the white gear wheel and manually turning the mechanism to raise/lower the windows. Before doing that, remove the plug and watch the white gear wheel while someone actuates the appropriate window switch - can you see the wheel trying to turn? If it is turning a bit, the wiring is OK but the motor isn't able to overcome the load.