I've too sliced the rear quarter for a patch panel. In my car the upper wheel arch was pretty good, but the floor connection was rusted.
To position the patch I used a NOS panel for measurements. I found that this ( see pics) measurement makes most sense; from the crest to the little fold that follows the boot floor.
I've measured it that at 3 different locations in the rear quarter. It allows you to move the patch panel top-down to it's appropriate height.
There are a lot of numbers on the pics, but the ones that helped me in the end the most where the (green pen) 302, 305 and 310 mm.
The black dimensions are taken from the bottom edge of the panel, up to the crest. (498, 491 and 475 mm). Matching to those numbers are:
498 & 194 mm (to bolt hole center);
491 & 181 mm ( to high point of feature line)
475 & 173 mm ( to high point of feature line)
The tape over the rear light opening has two measurements, as this is not easy to measure. 466mm is from bottom end of the panel up to the crest. That is also how the tape measure is clamped into place, it's zero point is around the corner.
455 mm is from the visible corner up to the crest. I found that easier to measure as I could not use the clamps on the car to check the 466 value.