My Baby is BACK and better than ever, with a new heart (aka engine) and 5 speed. I am in love!

On the clutch remaining depressed issue, check to make sure that the spring is free from anything near it, and also make sure that there isn’t an edge of the carpet or mat catching the pedal and keeping it down. May also want to squirt some grease along the shaft onto which all of the pedals are mounted. All easy things that don’t involve any deconstruction.
 
Glad to hear you've been enjoying the car Scott. Always bound to be teething issues! Something to check is also making sure that the clutch master pushrod has been adjusted properly so that it has full range of travel, although if done by CN I am sure this is something that would have been checked.
 
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