Maybe just the caps? I am confused 
When I get back to the shop, I'll check my new one against the old one.
The holes on the right are for the bolts that hold the hinge of the gas door to the car. In this photo I can't see two more holes that should be in the back right that allow the socket to come through and tighten the nuts that hold the rubber boot and the hinge for the door. Maybe they're there but if not you will have to make some. There is no way to tighten the nuts with the hinge in the way and the door open. The power of the springs is too much.I could be mistaken but aren’t those breather holes with the two caps missing on the new boots??
don’t think they are breather holes
Stan found a source that is quite similar to original for the plugs.
They only vent hose is attached to the filler neck, on euro coupes it vents under the trunk floor, on US coupes it routes to the plastic vapor tank then on to the charcoal canister under the battery and then to the air cleaner. There are only two large holes, Stan found a source that is quite similar to original for the plugs.
The holes on the right are for the bolts that hold the hinge of the gas door to the car. In this photo I can't see two more holes that should be in the back right that allow the socket to come through and tighten the nuts that hold the rubber boot and the hinge for the door. Maybe they're there but if not you will have to make some. There is no way to tighten the nuts with the hinge in the way and the door open. The power of the springs is too much.
I think the fuel injected cars had a small hose vent attached to a plug in one of the access holes. Not sure because I don't have a FI car but did see some evidence of that in my car before I stripped it.
Thanks HBChris, very helpful, will search for remaining sections of these hoses. I am concerned that if I just cap it at the vapor tank it will result in negative pressure in the tank.A blue plastic hose enters cabin behind right rear seat, goes to passenger floor next to the sill, up firewall, turns towards center of car, enters engine bay next to brake pipes in front of driver. Not with my coupe to confirm.
www.e9coupe.com